Results for Project: Osanto_et_al_Reneal_Cancer (7277231af3)
(note: pri_sequences can be expanded by clicking on the entry)
| id | chr | start | stop | strand | energy | pri_sequence | star_sequence | mature_sequence | Secondary Structure |
|---|---|---|---|---|---|---|---|---|---|
| chr19_1781 | chr19 | 43772395 | 43772504 | + | -45.6 |
CAGCCTTGAAGATacacacacgcacacatacaaacaaacacacacaAAAAACGGGCAtgtgtgtttgtgtatgtgtatgtgtgtgtgtCCTACTGTCCTACTAGGTCAAG
|
gtgtgtttgtgtatgtgtatg
|
cacacatacaaacaaacacacac
|
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| chr19_4772 | chr19 | 1621953 | 1622060 | - | -60.2 |
CGAGCGTATGGTAGGACCCAGGGCAGGGGGCAGGGGGTGGGCGGAGGGTGGCAGTGCCCATCTAACCCACCCTCCTCCTGCCTGACCCCCCAGGGCTACCAGCTGCATGG
|
GGGGGCAGGGGGTGGGCG
|
CCCTCCTCCTGCCTGACCCCC
|
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| chr1_3119 | chr1 | 116899922 | 116900031 | + | -36.3 |
ttttatatgaggatcagggaaactgtccatagagagaaattttcttttctttttttgagacagggtcttgctctgtcacccaggctggagcacagcggtgtgatcttggc
|
ctttttttgagacaggg
|
ctgtccatagagagaa
|
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| chr1_737 | chr1 | 15258554 | 15258663 | + | -50.9 |
CCAGGCTGCCCACCAGCACCCCGTGTTTCCCGTTCACCCTGAATTCCTGGCTCCTTGAGCCCCGCAGAGGAGCCAAGGCGCTGGGCAGGGTGCTAAGGAGACAGAGGAGA
|
CCTGGCTCCTTGAGCC
|
CCAAGGCGCTGGGCA
|
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| chr20_147 | chr20 | 3869962 | 3870071 | + | -56.8 |
CCCCAGCCTCGTCGGATTGGCTTCCTGCGCGTTGGCGCAACGGAAGAGGCGGCCGGCCGAGGGCGCGCCTCTGCTCTGGCTGGACTGCCGCGGAGGAGGCGAGAAGGAAT
|
GGCCGGCCGAGGGCGCG
|
TGCTCTGGCTGGACTGC
|
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| chr20_3096 | chr20 | 30449476 | 30449583 | - | -63.0 |
GGGACGCTCGGAGAAGGGCGAAGGTCGGGAGGGTGGGGGCGGGGCCGGCTGCCTTGACCCCGCCCCGCGCCGGCCTTGACCCCGCCCACCTCACCCGCCCACCCCAGCTT
|
AGGGTGGGGGCGGGGCCGGCT
|
CCGGCCTTGACCCCGCCCACC
|
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| chr20_3769 | chr20 | 634176 | 634283 | - | -55.7 |
GCTGGCTAGGAACCCCAGCAGCGGGGCAGCAGCGCACCGCGGGCTTTGCCGACTCACCCTGGCTGGGCAGGTCCGCCGCGCTCTCCCCCGCCCCCGCCCCCGCGGCCTAA
|
GGGCAGCAGCGCACCGCGG
|
GCCGCGCTCTCCCCCG
|
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| chr21_1383 | chr21 | 40028284 | 40028391 | - | -26.4 |
AAGCTGCATCCTGGAATCAGATTAGCTGGTGTTGTGAATCTCCATCTGAACTAAGATGGACAGTAAGAGAATCCCAATATCTTAGTAAATCTGTTACTTACCTATTGCCT
|
ATCCCAATATCTTAGTAA
|
GCTGGTGTTGTGAATC
|
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| chr22_1676 | chr22 | 48635937 | 48636044 | - | -34.3 |
CCCATTATCAAGGAGGGTCCTGCAGGGCCGCTGCGGTGATTAGATAAGGATCTTTTGTAATCGGCCCTGTCATTCTTTGTTCTTTAGAATGATGTTAAAGCCCTGTTTCT
|
CTTTTGTAATCGGCCCTG
|
GGGCCGCTGCGGTGAT
|
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| chr22_2408 | chr22 | 32744102 | 32744209 | - | -49.4 |
GCGTGTCTGGCACAGAGCGAAGTCCTGGGGTGGGGCCCTGGAGGTGTCCTGGAAAAAACGGGACACCTCCCTGTCCTCCAGGAGCTCACCCTAAGTCACAGAAGCCCATG
|
GAAGTCCTGGGGTGGGGCCCTGGAG
|
CCCTGTCCTCCAGGAGCTCAC
|
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| chr22_750 | chr22 | 37779830 | 37779939 | + | -44.5 |
ACACAGCACCAACAGCTGACAGCCAAGGCGTCAGGGTCTCTGCAAGGCCTTGGTGCTTTGGACGCGCATCTCCAGGTGTAACCTCAGCCAAAGAAGGGGCATGGggctgg
|
CTTGGTGCTTTGGAC
|
CCAAGGCGTCAGGGT
|
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| chr2_4863 | chr2 | 234728618 | 234728727 | + | -50.6 |
TCATTGACGGCATCCTGCTGCTGGCGCACCACCACCAGGAGACCATCCTCACATCGCTCCTGAGGCAGCCACTGCCCATGGAGAGGTGGGTGCCCTGGAGGAGGTGGCCC
|
TCGCTCCTGAGGCAGC
|
TGCCCATGGAGAGGTG
|
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| chr2_5440 | chr2 | 241086150 | 241086257 | - | -53.9 |
TCCCTTTCCTCCCGCGCAGCCAGGCCAGGCCACCCCAGCCCAGCCTTGTGCCCGTGGAGATTCCTCCTGCTTCACCAAGGCGCTGGGGCCCTGGCTGGCCTCTCGGTGAT
|
CCCCAGCCCAGCCTTGTG
|
CAAGGCGCTGGGGCC
|
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| chr2_7686 | chr2 | 133010656 | 133010763 | - | -44.0 |
GCCCGGGTTCCTCCCAGGGCTATGCCTGTCTGAGCGTCACTTGCCAATCAAAATCCCCCAGGGTTGCCTCTGGGCTCCTCGGGGTGCATGACTGTTCCCTGGCAGGGCCC
|
ATGACTGTTCCCTGGCAGGGC
|
CCTGTCTGAGCGTCACTT
|
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| chr2_8313 | chr2 | 105887927 | 105888034 | - | -41.0 |
AGGTCACACAGCCCACGAGCAGTAGAGCCAGAACACAGGTGTGGGTTGGTATTTCATGAAACCAGCAAACACTAGTTCTGGCTTGTACCTGCACCTACATTAGGACTTTC
|
ACTAGTTCTGGCTTGT
|
GAGCCAGAACACAGGTGT
|
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| chr2_8696 | chr2 | 85641924 | 85642031 | - | -41.4 |
GGTTGGCTATGCCACATTCAGGAGCCAAGGCGGAAGTGTGGACCCATCGCTGTCCAACACATTTCCAGAAGGCCTGGCCTCCTGGTGCAGATGCTTGCTGGCCTGTTTTC
|
ATTTCCAGAAGGCCTGGCC
|
CCAAGGCGGAAGTGT
|
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| chr2_9194 | chr2 | 64567877 | 64567984 | - | -74.6 |
ATCCTGTGTTCCCTATCCTCCTTATGTCCCACCCCCACTCCTGTTTGAATATTTCACCAGAAACAGGAGTGGGGGGTGGGACGTAAGGAGGATGGGGGAAAGAACATCAT
|
ACAGGAGTGGGGGGTGGGACGTA
|
TGTCCCACCCCCACTCCTGTTT
|
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| chr3_1214 | chr3 | 52108422 | 52108531 | + | -49.3 |
GGAGGATGGTGTTGAGAGCAGACCCTGTAGATCCAGTGGGACTGGTGGGGATGGGGAGTCCCACTGGGGGACTGATGGGGGATGGGCTTCTCTTGAGCACCTGCTCTGCA
|
ACTGGGGGACTGATGGGGGA
|
CCCTGTAGATCCAGTGG
|
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| chr3_5446 | chr3 | 122692527 | 122692629 | - | -55.0 |
CTGGGCTCCACACTTGGTGGGTTGCAGATTCCCAGAGTGGGACAGGGAGGCTCCACATTGCCTGCCCTCCTTGGGAATCTACAACCCCCCAAGTTTGCAGCATCG
|
TGCAGATTCCCAGAGTGGGACAG
|
GCCCTCCTTGGGAATCTACAAC
|
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| chr5_166 | chr5 | 2493449 | 2493558 | + | -37.6 |
GTTGACAGTGCTCATATGTGTGTGTGCACCGACTGCCTGCACATAGgtgtgtgcataggtttggatgtgtacacacaagtacctctgtgagcgtgcacctgaatacatgt
|
gtttggatgtgtaca
|
TGTGCACCGACTGCCT
|
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