Results for Project: Pandis_et_al_rheumatoid_arthritis (d127912bb4a2)
(note: pri_sequences can be expanded by clicking on the entry)
| id | chr | start | stop | strand | energy | pri_sequence | star_sequence | mature_sequence | Secondary Structure |
|---|---|---|---|---|---|---|---|---|---|
| chr1_407 | chr1 | 40259497 | 40259636 | + | -67.8 |
tgcacatctgtgtgtgtgcatatgactgtgcctgtacatatgtgtgtgcatgtgagcatatgtgcatgtacatgtatgtgcatgtacatacatgtgtgcgcgcgccatgcatgtgcacatatCTCTTGAGCAGACAGTCC
|
catgtgtgcgcgcgccatgcat
|
gactgtgcctgtacatatgtg
|
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| chr1_4079 | chr1 | 16656863 | 16657000 | - | -63.6 |
GGCCTTGCCAGGTACCAGTCTCCCGCGCGTTACAGAAAGCGGCTGTGACGCGACGGAAGTAATTCCTTTCTGTGCCCCGGAACCCACAGGGGTAGGCCGCTGGGGGTGGGAGGGGGGCGGCCCTGAATAGGGGCTGTGGC
|
GTGCCCCGGAACCCACAGGGGT
|
CGCTGGGGGTGGGAGGGGGGCGG
|
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| chr2_100 | chr2 | 10491328 | 10491467 | + | -50.0 |
CCTACGTatgtgtatatgtgttgatgtgtgtgtgcatgtacatatgtgaatatgatatacatatacatacacgcacacataaGACACATATGAGCACACAGACACAGGGGAATGGCACTCGTCAATCCATTTGAATGATA
|
tatacatacacgcacacataa
|
atgtgtgtgtgcatgtacatatg
|
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| chr2_179 | chr2 | 18057825 | 18057927 | + | -49.0 |
CGACTCCTCCACTTCCGCCTGCGGCCCACGGAGCTCCTAAAGACTCGCCCTGCCGGGTTTATGACGCTCCGTGGGCCTGCAAGGAGGGGGTTCCCTGCCGCTG
|
CGGCCCACGGAGCTCCTAAAGAC
|
TTATGACGCTCCGTGGGCCTGCA
|
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| chr2_1833 | chr2 | 152108808 | 152108947 | + | -49.6 |
ATTTCTCTGTCAGAAATACTCTTGGGGCTGATTTTCAAGCTGCCAGGATAACACCCACCAGCTTGCAGAACCAACCCCTAAGGGGCTAAGAGGCTGCTGCTCCTGCCAGCACGAGCCCTCTGGCATTTTGCCAGTTCTCA
|
CAGCTTGCAGAACCAACCCCTAAG
|
TGGGGCTGATTTTCAAGCTGCC
|
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| chr2_2301 | chr2 | 174330104 | 174330243 | + | -72.3 |
ggcggcggcggcggcagcagcTCCCGCGGCTCCTGCTCTGCTCCGCCTCGGCCCCGGAGCGAGGGGCGGAGAGCCGCGCGCTTGCCTTAGTCCGAGCCGCCAccctccccgcgttccccgctttcccggcccgcccgagg
|
CGAGGGGCGGAGAGCCGCGCGCT
|
CCCGCGGCTCCTGCTCTGCT
|
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| chr2_2302 | chr2 | 174330029 | 174330168 | + | -100.6 |
cccccgctcccccgcccgccgcGGCGCTTTTGGGTcggggcggcgggcccgggccgAGGCAATAAGAgcggcggcggcggcggcggcggcagcagcTCCCGCGGCTCCTGCTCTGCTCCGCCTCGGCCCCGGAGCGAGGG
|
AAGAgcggcggcggcggcgg
|
CCCGCGGCTCCTGCTCTGCT
|
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| chr2_2402 | chr2 | 180894023 | 180894160 | - | -59.2 |
CGCGACGGCCGGGCTCCCGGGCCATTTCCATGAGAAAGGAGCGGCGGAGGCGCCTCTCTTGGCATTCACCGCGTGCCTTAATTGTATAGACATTAAATCAAGGTCCGCTGTGAACACGCAGAGGGGCCCTCAGGGCTGCG
|
GGCATTCACCGCGTGCCTTAAT
|
CAAGGTCCGCTGTGAACACGCA
|
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| chr2_2554 | chr2 | 169318872 | 169319009 | - | -57.1 |
TGTTAGAGAGGGGGTGGGGTCAGTGTGTATGTGTGTGCATTGTGCATGTGCATGTGTGTATGTGCATGAGTGCATGTGCATGCATGTGTGTGCGCATGTATGTGTGCATGTGCATGTATGTGTGCATGTGCATGTGTGTG
|
TGTGTATGTGCATGAGTGCATG
|
TGTATGTGTGCATGTGCATGTATG
|
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| chr2_3137 | chr2 | 131558767 | 131558904 | - | -55.4 |
ATGCTCGGACTACACATGTGTGCTGATGCTCGGACCACATGTGTGTGCTGATGCTGGGACCACACGTGTGTGCTGATGCTCGGATCACACGTGTGTGCTGATGCTGGGACCACACGTGTGTGCAGATGCTTAGACTACAT
|
CACGTGTGTGCTGATGCTGG
|
ATGCTCGGACCACATGTGTG
|
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| chr2_3138 | chr2 | 131558841 | 131558978 | - | -45.8 |
CTCAGTGCCCCTTCCTCTTCCACCTCCCCAGAGAGGATGCTGGCACTTACCACTCTGACCACATACATGTACTGATGCTCGGACTACACATGTGTGCTGATGCTCGGACCACATGTGTGTGCTGATGCTGGGACCACACG
|
TACATGTACTGATGCTCG
|
ATGCTCGGACCACATGTGTG
|
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| chr2_3217 | chr2 | 126902268 | 126902405 | - | -50.9 |
TACTAGGAACCAAACTCTGATCCTCTGCAAGTGGAGCAAGTGCTCACCACCGAGCCATCTCTCCAACCTTCATATTTGTATTTGTTAGACAAGAAGTACAAAAGTGAGGCTGGGGAGAGGGTTTGCAGTGTGTATTGCTC
|
TCTCTCCAACCTTCATATTTGTA
|
CAAAAGTGAGGCTGGGGAGAGG
|
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| chr2_4121 | chr2 | 45039392 | 45039498 | - | -48.6 |
CAAGAACAGTACAGGCTCTTAACTGCTGAGCTTCCTTTCCAGATCTTCACACATATTTTTAGGGGATGGAGAGATTGTTCAGCGGTTAAGAGCACTGGTTGCTCTTCCA
|
CTGCTGAGCTTCCTTTCCAGATCT
|
ATGGAGAGATTGTTCAGCGGTT
|
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| chr2_4333 | chr2 | 29890223 | 29890360 | - | -73.4 |
GAGCCAGACCGCTCCTGGATCACCCACATCCCTGGAGCTGGTCTGGAGGGTCCCCGGAGGCCTGCCCACCCCGAGCGCATGTAACTGCTGCGGCCCAGTCCGCAGAGAGCAGGGGTGGCCTCCGGGGAGGATGGGGCGCA
|
CAGACCGCTCCTGGATCACC
|
ACATCCCTGGAGCTGGTCTGGA
|
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| chr2_442 | chr2 | 30720267 | 30720380 | + | -43.2 |
TCCAAGTGGTCTATCAATTCCTGCCTCTGGAAGGTTTGGCAGGCTTTTATGGAGCAGAGAGAACAGGTCTCCAAAGCTCCCAGAGGCTAGGAACTGGGGGCTGAACTCAAGCTT
|
CTCCAAAGCTCCCAGAGGCTA
|
GCCTCTGGAAGGTTTGGCAGGC
|
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| chr2_553 | chr2 | 32920866 | 32921005 | + | -51.8 |
TGGGATATCCATGGGCTGGGATGATGGGGTGGGGTGGATTGTGTCCCAGGCTCTGTCACCAACGAAATTCTCTCCCTCCCCATACAGCCTTCATCCTCCCCAAGGCGGAGGTGTGCGTGAGGAACCACGTCCAGCCCTAC
|
CGAAATTCTCTCCCTCCCCATAC
|
ATGGGGTGGGGTGGATTGTGTC
|
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| chr2_556 | chr2 | 32923314 | 32923453 | + | -54.7 |
CTGGGCTTGAGTTATACTTTTGCGGCAGGAAGGCCCAGAGCAAAGCAAGGCCCAGGAGGCTGTCTGGTTTGCCATGACTGTCCATGCTGAGTGTGCTGTGTCTCTTTGGTCTTGCAGCTGTGAAGGAGGCCGCAGTGCAG
|
AGGAAGGCCCAGAGCAAAG
|
GTGTCTCTTTGGTCTTGCAGC
|
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| chr2_629 | chr2 | 35979314 | 35979453 | + | -82.8 |
AGCTGGCTCAGGGCCCGCGCCGCCGGCCTCGGCTGGGCCAGGGGCAGCGCTGGTGGCAGCCGCCGGACGACGCGGGCCTCTCCTTCCTCGGGCGCGTGGCGTCGCGTCGGGGTCGGGATCCGGCCCACGTCCTTGGGCTG
|
CTTCCTCGGGCGCGTG
|
CGCGTCGGGGTCGGGA
|
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| chr3_1290 | chr3 | 122402247 | 122402386 | + | -50.0 |
CAGTTGTTGCTGGAGCTCTGCTGGATGTGTGAGGCGCCATGGTTCCTCCTGGCTTCTGTCTGCATCCGCCAGCTGGGGGGTGGGAGGGGGGAGTGAAATCTATATTTAACCCATAGGTGGAGGCTATATTTAGCCTCTGA
|
CTTCTGTCTGCATCCGCCAG
|
GGATGTGTGAGGCGCC
|
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| chr3_2202 | chr3 | 116667573 | 116667710 | - | -58.8 |
CTTTGGACTTGAACCCGAGTCGTTTGGAAGAACATCTACTGCTCTTAACTTCTGAGCCATCTTTCCAGTCCCCTTAAACTATATTTTAAAACATTTAGGGGCTGGAAAGGTGACTCAGTGGTTAAGAGCACTGACTGCTC
|
TGAGCCATCTTTCCAGTCCCCTTA
|
AGGGGCTGGAAAGGTGACTCAGT
|
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